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» Constraint Based Methods for Biological Sequence Analysis
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263
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TKDE
2012
245views Formal Methods» more  TKDE 2012»
13 years 6 months ago
Semi-Supervised Maximum Margin Clustering with Pairwise Constraints
—The pairwise constraints specifying whether a pair of samples should be grouped together or not have been successfully incorporated into the conventional clustering methods such...
Hong Zeng, Yiu-ming Cheung
GLOBECOM
2008
IEEE
15 years 10 months ago
Guaranteed Boxed Localization in MANETs by Interval Analysis and Constraints Propagation Techniques
Abstract—In this contribution, we propose an original algorithm for self-localization in mobile ad-hoc networks. The proposed technique, based on interval analysis, is suited to ...
Farah Mourad, Hichem Snoussi, Fahed Abdallah, C&ea...
117
Voted
RECOMB
2007
Springer
16 years 4 months ago
A Feature-Based Approach to Modeling Protein-DNA Interactions
Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position spe...
Eilon Sharon, Eran Segal
128
Voted
BMCBI
2007
134views more  BMCBI 2007»
15 years 3 months ago
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
115
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VLSISP
2010
119views more  VLSISP 2010»
14 years 10 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton