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» Contextual alignment of biological sequences
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RECOMB
2009
Springer
14 years 8 months ago
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
Eagu Kim, Travis J. Wheeler, John D. Kececioglu
BMCBI
2010
147views more  BMCBI 2010»
13 years 7 months ago
Automatic detection of anchor points for multiple sequence alignment
Background: Determining beforehand specific positions to align (anchor points) has proved valuable for the accuracy of automated multiple sequence alignment (MSA) software. This f...
Florian Pitschi, Claudine Devauchelle, Eduardo Cor...
AIRS
2004
Springer
14 years 1 months ago
Improving Transliteration with Precise Alignment of Phoneme Chunks and Using Contextual Features
Abstract. Automatic transliteration of foreign names is basically regarded as a diminutive clone of the machine translation (MT) problem. It thus follows IBM’s conventional MT mo...
Wei Gao, Kam-Fai Wong, Wai Lam
ISMB
1998
13 years 9 months ago
A Statistical Theory of Sequence Alignment with Gaps
Astatistical theory of local alignmentalgorithms with gaps is presented. Both the linear and logarithmic phases, as well as the phase transition separating the two phases, are des...
Dirk Drasdo, Terence Hwa, Michael Lässig
DEXA
2007
Springer
150views Database» more  DEXA 2007»
14 years 1 months ago
Sequence Alignment as a Database Technology Challenge
Abstract. Sequence alignment is an important task for molecular biologists. Because alignment basically deals with approximate string matching on large biological sequence collecti...
Hans Philippi