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» D-finiteness: algorithms and applications
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BMCBI
2008
130views more  BMCBI 2008»
13 years 9 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
ICCAD
2004
IEEE
111views Hardware» more  ICCAD 2004»
14 years 5 months ago
A new incremental placement algorithm and its application to congestion-aware divisor extraction
— This paper presents two contributions. The first is an incremental placement algorithm for placement-aware logic synthesis along with a proof of optimality. The algorithm can ...
Satrajit Chatterjee, Robert K. Brayton
ISCAS
2006
IEEE
81views Hardware» more  ISCAS 2006»
14 years 2 months ago
Equivalent output-filtering using fast QRD-RLS algorithm for burst-type training applications
— Fast QR decomposition RLS (FQRD-RLS) algorithms are well known for their good numerical properties and low computational complexity. The FQRD-RLS algorithms do not provide acce...
Mobien Shoaib, Stefan Werner, J. A. Apoliná...
CHES
2005
Springer
107views Cryptology» more  CHES 2005»
14 years 2 months ago
A New Baby-Step Giant-Step Algorithm and Some Applications to Cryptanalysis
We describe a new variant of the well known Baby-Step Giant-Step algorithm in the case of some discrete logarithms with a special structure. More precisely, we focus on discrete lo...
Jean-Sébastien Coron, David Lefranc, Guilla...