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» Design of DNA origami
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ICCD
2006
IEEE
134views Hardware» more  ICCD 2006»
14 years 2 months ago
Automated Design of Microfluidics-Based Biochips: Connecting Biochemistry to Electronics CAD
Microfluidics-based biochips offer exciting possibilities for highthroughput sequencing, parallel immunoassays, blood chemistry for clinical diagnostics, DNA sequencing, and envir...
Krishnendu Chakrabarty
EMMCVPR
2001
Springer
14 years 1 months ago
Designing the Minimal Structure of Hidden Markov Model by Bisimulation
Hidden Markov Models (HMMs) are an useful and widely utilized approach to the modeling of data sequences. One of the problems related to this technique is finding the optimal stru...
Manuele Bicego, Agostino Dovier, Vittorio Murino
BMCBI
2010
137views more  BMCBI 2010»
13 years 8 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
BMCBI
2010
124views more  BMCBI 2010»
13 years 8 months ago
GPFrontend and GPGraphics: graphical analysis tools for genetic association studies
Background: Most software packages for whole genome association studies are non-graphical, purely text based programs originally designed to run with UNIX-like operating systems. ...
Steffen Uebe, Francesca Pasutto, Mandy Krumbiegel,...
RECONFIG
2009
IEEE
182views VLSI» more  RECONFIG 2009»
14 years 3 months ago
Scalability Studies of the BLASTn Scan and Ungapped Extension Functions
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...
Siddhartha Datta, Ron Sass