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JCB
2007
108views more  JCB 2007»
13 years 8 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data
Background: A key step in the analysis of microarray expression profiling data is the identification of genes that display statistically significant changes in expression signals ...
Dietmar E. Martin, Philippe Demougin, Michael N. H...
RECOMB
2007
Springer
14 years 9 months ago
A Feature-Based Approach to Modeling Protein-DNA Interactions
Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position spe...
Eilon Sharon, Eran Segal
VLDB
2007
ACM
137views Database» more  VLDB 2007»
14 years 3 months ago
Detecting Attribute Dependencies from Query Feedback
Real-world datasets exhibit a complex dependency structure among the data attributes. Learning this structure is a key task in automatic statistics configuration for query optimi...
Peter J. Haas, Fabian Hueske, Volker Markl
PAMI
2010
147views more  PAMI 2010»
13 years 7 months ago
The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning
—Medial representations of shapes are useful due to their use of an object-centered coordinate system that directly captures intuitive notions of shape such as thickness, bending...
Aaron D. Ward, Ghassan Hamarneh