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» Discovering gene annotations in biomedical text databases
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BMCBI
2007
218views more  BMCBI 2007»
13 years 9 months ago
Annotation and query of tissue microarray data using the NCI Thesaurus
Background: The Stanford Tissue Microarray Database (TMAD) is a repository of data serving a consortium of pathologists and biomedical researchers. The tissue samples in TMAD are ...
Nigam H. Shah, Daniel L. Rubin, Inigo Espinosa, Ke...
IWANN
2009
Springer
14 years 4 months ago
Identifying Gene Ontology Areas for Automated Enrichment
Biomedical ontologies provide a commonly accepted scheme for the characterization of biological concepts that enable knowledge sharing and integration. Updating and maintaining an ...
Catia Pesquita, Tiago Grego, Francisco M. Couto
BMCBI
2007
135views more  BMCBI 2007»
13 years 10 months ago
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput
Background: Due to the complex and distributed nature of biological research, our current biological knowledge is spread over many redundant annotation databases maintained by man...
Brad T. Sherman, Da Wei Huang, Qina Tan, Yongjian ...
BMCBI
2010
110views more  BMCBI 2010»
13 years 10 months ago
Concept-based query expansion for retrieving gene related publications from MEDLINE
Background: Advances in biotechnology and in high-throughput methods for gene analysis have contributed to an exponential increase in the number of scientific publications in thes...
Sérgio Matos, Joel Arrais, João Maia...
SIGIR
2005
ACM
14 years 3 months ago
An application of text categorization methods to gene ontology annotation
This paper describes an application of IR and text categorization methods to a highly practical problem in biomedicine, specifically, Gene Ontology (GO) annotation. GO annotation...
Kazuhiro Seki, Javed Mostafa