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» Efficient Barriers for Distributed Shared Memory Computers
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SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
BMCBI
2011
12 years 11 months ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...
DAC
2005
ACM
14 years 8 months ago
Power emulation: a new paradigm for power estimation
In this work, we propose a new paradigm called power emulation, which exploits hardware acceleration to drastically speedup power estimation. Power emulation is based on the obser...
Joel Coburn, Srivaths Ravi, Anand Raghunathan
NGC
2002
Springer
103views Communications» more  NGC 2002»
13 years 7 months ago
An Evaluation of Topology-sensitive Subgroup Communication Mechanism in Large-scale Multicast Applications
Abundant content, data type and diverse members' interests naturally lead to preference heterogeneity within a multicast session requiring frequent communication within subgr...
Jangwon Lee, Gustavo de Veciana
HPCA
2005
IEEE
14 years 8 months ago
Effective Instruction Prefetching in Chip Multiprocessors for Modern Commercial Applications
In this paper, we study the instruction cache miss behavior of four modern commercial applications (a database workload, TPC-W, SPECjAppServer2002 and SPECweb99). These applicatio...
Lawrence Spracklen, Yuan Chou, Santosh G. Abraham