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BMCBI
2011
13 years 2 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
VLSID
2002
IEEE
106views VLSI» more  VLSID 2002»
14 years 7 months ago
SWASAD: An ASIC Design for High Speed DNA Sequence Matching
This paper presents the Smith and Waterman Algorithm-Specific ASIC Design (SWASAD) project. This is a hardware solution that implements the S&W algorithm.. The SWASAD is an imp...
Tony Han, Sri Parameswaran
RECOMB
2002
Springer
14 years 7 months ago
String barcoding: uncovering optimal virus signatures
There are many critical situations when one needs to rapidly identify an unidentified pathogen from among a given set of previously sequenced pathogens. DNA or RNA hybridization c...
Sam Rash, Dan Gusfield
DAC
2008
ACM
13 years 9 months ago
IntellBatt: towards smarter battery design
Battery lifetime and safety are primary concerns in the design of battery operated systems. Lifetime management is typically supervised by the system via battery-aware task schedu...
Suman Kalyan Mandal, Praveen Bhojwani, Saraju P. M...
IPPS
2009
IEEE
14 years 2 months ago
CellMR: A framework for supporting mapreduce on asymmetric cell-based clusters
The use of asymmetric multi-core processors with onchip computational accelerators is becoming common in a variety of environments ranging from scientific computing to enterprise...
M. Mustafa Rafique, Benjamin Rose, Ali Raza Butt, ...