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» Evolutionary Computing as a Tool for Grammar Development
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BMCBI
2010
118views more  BMCBI 2010»
13 years 8 months ago
Towards realistic benchmarks for multiple alignments of non-coding sequences
Background: With the continued development of new computational tools for multiple sequence alignment, it is necessary today to develop benchmarks that aid the selection of the mo...
Jaebum Kim, Saurabh Sinha
RECOMB
2010
Springer
14 years 2 months ago
On the Genealogy of Asexual Diploids
Given molecular genetic data from diploid individuals that, at present, reproduce mostly or exclusively asexually without recombination, an important problem in evolutionary biolog...
Fumei Lam, Charles H. Langley, Yun S. Song
RECOMB
2006
Springer
14 years 8 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
ACL
2009
13 years 5 months ago
Sentence diagram generation using dependency parsing
Dependency parsers show syntactic relations between words using a directed graph, but comparing dependency parsers is difficult because of differences in theoretical models. We de...
Elijah Mayfield
BMCBI
2007
142views more  BMCBI 2007»
13 years 7 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto