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ALGORITHMICA
2005
108views more  ALGORITHMICA 2005»
13 years 8 months ago
Key-Independent Optimality
A new form of optimality for comparison based static dictionaries is introduced. This type of optimality, keyindependent optimality, is motivated by applications that assign key v...
John Iacono
NIPS
1996
13 years 9 months ago
Predicting Lifetimes in Dynamically Allocated Memory
Predictions oflifetimesofdynamicallyallocated objects can be used to improve time and space e ciency of dynamic memory management in computer programs. Barrett and Zorn 1993] used...
David A. Cohn, Satinder P. Singh
RECOMB
2007
Springer
14 years 8 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2004
Springer
14 years 8 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
BMCBI
2007
153views more  BMCBI 2007»
13 years 8 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte