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» Finding Transport Proteins in a General Protein Database
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NAR
2007
102views more  NAR 2007»
13 years 7 months ago
ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics softwar...
Coral del Val, Peter Ernst, Mechthild Falkenhahn, ...
RECOMB
2006
Springer
14 years 7 months ago
Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting
Abstract. Peptide mass fingerprinting is a technique to identify a protein from its fragment masses obtained by mass spectrometry after enzymatic digestion. Recently, much attentio...
Hans-Michael Kaltenbach, Sebastian Böcker, Sv...
BMCBI
2008
108views more  BMCBI 2008»
13 years 7 months ago
A nonparametric model for quality control of database search results in shotgun proteomics
Background: Analysis of complex samples with tandem mass spectrometry (MS/MS) has become routine in proteomic research. However, validation of database search results creates a bo...
Jiyang Zhang, Jianqi Li, Xin Liu, Hongwei Xie, Yun...
NAR
2007
65views more  NAR 2007»
13 years 7 months ago
STRING 7 - recent developments in the integration and prediction of protein interactions
Information on protein–protein interactions is still mostly limited to a small number of model organisms, and originates from a wide variety of experimental and computational te...
Christian von Mering, Lars Juhl Jensen, Michael Ku...
ICML
2008
IEEE
14 years 8 months ago
Sequence kernels for predicting protein essentiality
The problem of identifying the minimal gene set required to sustain life is of crucial importance in understanding cellular mechanisms and designing therapeutic drugs. This work d...
Cyril Allauzen, Mehryar Mohri, Ameet Talwalkar