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ECCB
2008
IEEE
14 years 2 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
WEA
2007
Springer
114views Algorithms» more  WEA 2007»
14 years 2 months ago
Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data
Abstract. A major task in evolutionary biology is to determine the ancestral relationships among the known species, a process generally referred as phylogenetic reconstruction. In ...
Fei Ye, Yan Guo, Andrew Lawson, Jijun Tang
IPTPS
2005
Springer
14 years 1 months ago
Chainsaw: Eliminating Trees from Overlay Multicast
In this paper, we present Chainsaw, a p2p overlay multicast system that completely eliminates trees. Peers are notified of new packets by their neighbors and must explicitly requ...
Vinay S. Pai, Kapil Kumar, Karthik Tamilmani, Vina...
SSDBM
2011
IEEE
239views Database» more  SSDBM 2011»
12 years 11 months ago
Recipes for Baking Black Forest Databases - Building and Querying Black Hole Merger Trees from Cosmological Simulations
Large-scale N-body simulations play an important role in advancing our understanding of the formation and evolution of large structures in the universe. These computations require ...
Julio López, Colin Degraf, Tiziana DiMatteo...
SMA
2003
ACM
120views Solid Modeling» more  SMA 2003»
14 years 1 months ago
Three-dimensional halfspace constructive solid geometry tree construction from implicit boundary representations
This paper presents a new method to compute constructive solid geometry (CSG) tree representations of an object whose faces consist of planar and non-planar surfaces. The algorith...
Suzanne F. Buchele, Richard H. Crawford