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CADE
2006
Springer
14 years 8 months ago
CEL - A Polynomial-Time Reasoner for Life Science Ontologies
CEL (Classifier for EL) is a reasoner for the small description logic EL+ which can be used to compute the subsumption hierarchy induced by EL+ ontologies. The most distinguishing ...
Franz Baader, Carsten Lutz, Boontawee Suntisrivara...
BIOINFORMATICS
2007
117views more  BIOINFORMATICS 2007»
13 years 7 months ago
Mining biological networks for unknown pathways
Biological pathways provide significant insights on the interaction mechanisms of molecules. Presently, many essential pathways still remain unknown or incomplete for newly sequen...
Ali Cakmak, Gultekin Özsoyoglu
BMCBI
2007
141views more  BMCBI 2007»
13 years 7 months ago
Reconstruction of human protein interolog network using evolutionary conserved network
Background: The recent increase in the use of high-throughput two-hybrid analysis has generated large quantities of data on protein interactions. Specifically, the availability of...
Tao-Wei Huang, Chung-Yen Lin, Cheng-Yan Kao
BMCBI
2008
117views more  BMCBI 2008»
13 years 7 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
NAR
2011
197views Computer Vision» more  NAR 2011»
12 years 10 months ago
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species
AmoebaDB (http://AmoebaDB.org) and MicrosporidiaDB (http://MicrosporidiaDB.org) are new functional genomic databases serving the amoebozoa and microsporidia research communities, ...
Cristina Aurrecoechea, Ana Barreto, John Brestelli...