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» Gene set analysis for longitudinal gene expression data

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NAR
2010

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Xenbase: gene expression and improved integration

13 years 2 months ago

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Xenbase (www.xenbase.org), the model organism database for Xenopus laevis and X. (Silurana) tropicalis, is the principal centralized resource of genomic, development data and comm...

Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ch...

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BMCBI
2005

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Signal transduction pathway profiling of individual tumor samples

13 years 7 months ago

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Background: Signal transduction pathways convey information from the outside of the cell to transcription factors, which in turn regulate gene expression. Our objective is to anal...

Thomas Breslin, Morten Krogh, Carsten Peterson, Ca...

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BMCBI
2006

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Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle

13 years 7 months ago

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Background: A transcriptional regulatory module (TRM) is a set of genes that is regulated by a common set of transcription factors (TFs). By organizing the genome into TRMs, a liv...

Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen

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BMCBI
2006

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STEM: a tool for the analysis of short time series gene expression data

13 years 7 months ago

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Jason Ernst, Ziv Bar-Joseph

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