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» Gene set analysis using principal components
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BMCBI
2010
96views more  BMCBI 2010»
13 years 9 months ago
A statistical framework for differential network analysis from microarray data
Background: It has been long well known that genes do not act alone; rather groups of genes act in consort during a biological process. Consequently, the expression levels of gene...
Ryan Gill, Somnath Datta, Susmita Datta
NAR
2010
123views more  NAR 2010»
13 years 4 months ago
Xenbase: gene expression and improved integration
Xenbase (www.xenbase.org), the model organism database for Xenopus laevis and X. (Silurana) tropicalis, is the principal centralized resource of genomic, development data and comm...
Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ch...
KDD
2007
ACM
167views Data Mining» more  KDD 2007»
14 years 10 months ago
Generalized component analysis for text with heterogeneous attributes
We present a class of richly structured, undirected hidden variable models suitable for simultaneously modeling text along with other attributes encoded in different modalities. O...
Xuerui Wang, Chris Pal, Andrew McCallum
BMCBI
2004
143views more  BMCBI 2004»
13 years 9 months ago
Comparing functional annotation analyses with Catmap
Background: Ranked gene lists from microarray experiments are usually analysed by assigning significance to predefined gene categories, e.g., based on functional annotations. Tool...
Thomas Breslin, Patrik Edén, Morten Krogh
APBC
2004
164views Bioinformatics» more  APBC 2004»
13 years 11 months ago
Cluster Ensemble and Its Applications in Gene Expression Analysis
Huge amount of gene expression data have been generated as a result of the human genomic project. Clustering has been used extensively in mining these gene expression data to find...
Xiaohua Hu, Illhoi Yoo