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BMCBI
2010
144views more  BMCBI 2010»
13 years 7 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...
BMCBI
2007
126views more  BMCBI 2007»
13 years 7 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
PPOPP
1990
ACM
13 years 11 months ago
Concurrent Aggregates (CA)
Toprogrammassivelyconcurrent MIMDmachines, programmersneed tools for managingcomplexity. One important tool that has been used in the sequential programmingworld is hierarchies of...
Andrew A. Chien, William J. Dally
STACS
2009
Springer
14 years 2 months ago
A Unified Algorithm for Accelerating Edit-Distance Computation via Text-Compression
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic-programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...
MICRO
2003
IEEE
258views Hardware» more  MICRO 2003»
14 years 22 days ago
LLVA: A Low-level Virtual Instruction Set Architecture
A virtual instruction set architecture (V-ISA) implemented via a processor-specific software translation layer can provide great flexibility to processor designers. Recent examp...
Vikram S. Adve, Chris Lattner, Michael Brukman, An...