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» High-performance computing using accelerators
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FCCM
2006
IEEE
119views VLSI» more  FCCM 2006»
15 years 8 months ago
Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report
: We describe a new pipeline for computing non-bonded forces and its integration into the ProtoMol molecular dynamics (MD) code. There are several innovations: a novel interpolatio...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt
132
Voted
IPPS
2009
IEEE
15 years 8 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
VMV
2000
175views Visualization» more  VMV 2000»
15 years 3 months ago
Accelerating Morphological Analysis with Graphics Hardware
Direct volume rendering is a common means of visualizing three-dimensional data nowadays. It is, however, still a very time consuming process to create informative and visual appe...
Matthias Hopf, Thomas Ertl
NIPS
2008
15 years 3 months ago
Accelerating Bayesian Inference over Nonlinear Differential Equations with Gaussian Processes
Identification and comparison of nonlinear dynamical system models using noisy and sparse experimental data is a vital task in many fields, however current methods are computation...
Ben Calderhead, Mark Girolami, Neil D. Lawrence
110
Voted
IJCBDD
2008
113views more  IJCBDD 2008»
15 years 2 months ago
Parsimony accelerated Maximum Likelihood searches
: Phylogenetic search is a key tool used in a variety of biological research endeavors. However, this search problem is known to be computationally difficult, due to the astronomic...
Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll,...