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BMCBI
2007
134views more  BMCBI 2007»
13 years 7 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
SIGOPS
2010
179views more  SIGOPS 2010»
13 years 2 months ago
Online cache modeling for commodity multicore processors
Modern chip-level multiprocessors (CMPs) contain multiple processor cores sharing a common last-level cache, memory interconnects, and other hardware resources. Workloads running ...
Richard West, Puneet Zaroo, Carl A. Waldspurger, X...
SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
IEEEPACT
2006
IEEE
14 years 1 months ago
Branch predictor guided instruction decoding
Fast instruction decoding is a challenge for the design of CISC microprocessors. A well-known solution to overcome this problem is using a trace cache. It stores and fetches alrea...
Oliverio J. Santana, Ayose Falcón, Alex Ram...
DAC
2006
ACM
14 years 1 months ago
Signature-based workload estimation for mobile 3D graphics
Until recently, most 3D graphics applications had been regarded as too computationally intensive for devices other than desktop computers and gaming consoles. This notion is rapid...
Bren Mochocki, Kanishka Lahiri, Srihari Cadambi, X...