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BMCBI
2007
233views more  BMCBI 2007»
13 years 7 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
VIS
2006
IEEE
128views Visualization» more  VIS 2006»
14 years 8 months ago
Hierarchy-based 3-D Visualization of Homologous Gene Expression across Different Organisms
With the explosive growth of proteomic and expression data of homologous genes, it becomes necessary to explore new methods to visualize and analyze related gene expression data t...
Li Jin, Karl V. Steiner, Carl J. Schmidt, Keith...
DI
2006
156views more  DI 2006»
13 years 7 months ago
Identifying almost identical files using context triggered piecewise hashing
Fuzzy hashing allows the discovery of potentially incriminating documents that may not be located using traditional hashing methods. The use of the fuzzy hash is much like the fuz...
Jesse D. Kornblum