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» Identifying Structural Motifs in Proteins
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BMCBI
2010
175views more  BMCBI 2010»
13 years 10 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng
BMCBI
2007
114views more  BMCBI 2007»
13 years 10 months ago
Combination of scoring schemes for protein docking
Background: Docking algorithms are developed to predict in which orientation two proteins are likely to bind under natural conditions. The currently used methods usually consist o...
Philipp Heuser, Dietmar Schomburg
APBC
2004
117views Bioinformatics» more  APBC 2004»
13 years 11 months ago
Detecting Local Symmetry Axis in 3-dimensional Virus Structures
This paper presents an efficient computational method to identify a local symmetry axis in 3-dimensional viral structures obtained using electron cryomicroscopy. Local symmetry is...
Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael...
BMCBI
2007
142views more  BMCBI 2007»
13 years 10 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
BMCBI
2008
130views more  BMCBI 2008»
13 years 10 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...