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BMCBI
2007
233views more  BMCBI 2007»
13 years 8 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
IESS
2007
Springer
92views Hardware» more  IESS 2007»
14 years 2 months ago
An Interactive Model Re-Coder for Efficient SoC Specification
To overcome the complexity in System-on-Chip (SoC) design, researchers have developed sophisticated design flows that significantly reduce the development time through automation...
Pramod Chandraiah, Rainer Dömer
CAMAD
2009
IEEE
14 years 1 months ago
Improving Federation Executions with Migrating HLA/RTI Central Runtime Components
— Simulation tools are popular in the design and study of communication systems and networks. The implementation of analytic distributed simulations commonly require a central en...
Ricardo Lent
ICS
2001
Tsinghua U.
14 years 22 days ago
Computer aided hand tuning (CAHT): "applying case-based reasoning to performance tuning"
For most parallel and high performance systems, tuning guides provide the users with advices to optimize the execution time of their programs. Execution time may be very sensitive...
Antoine Monsifrot, François Bodin
ETFA
2008
IEEE
14 years 2 months ago
Using neural networks for quality management
We present a method for fine grain QoS control of multimedia applications. This method takes as input an application software composed of actions. The execution times are unknown...
Mohamad Jaber, Jacques Combaz, Loïc Strus, Je...