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» Including Biological Literature Improves Homology Search
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BMCBI
2006
95views more  BMCBI 2006»
13 years 7 months ago
Discrete profile comparison using information bottleneck
Sequence homologs are an important source of information about proteins. Amino acid profiles, representing the position-specific mutation probabilities found in profiles, are a ri...
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleaza...
NAR
2010
107views more  NAR 2010»
13 years 2 months ago
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
FlyTF (http://www.flytf.org) is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly Drosophila melano...
Ulrike Pfreundt, Daniel P. James, Susan Tweedie, D...
BMCBI
2004
101views more  BMCBI 2004»
13 years 7 months ago
A database for G proteins and their interaction with GPCRs
Background: G protein-coupled receptors (GPCRs) transduce signals from extracellular space into the cell, through their interaction with G proteins, which act as switches forming ...
Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioanni...
NAR
2010
123views more  NAR 2010»
13 years 2 months ago
Xenbase: gene expression and improved integration
Xenbase (www.xenbase.org), the model organism database for Xenopus laevis and X. (Silurana) tropicalis, is the principal centralized resource of genomic, development data and comm...
Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ch...
EVOW
2007
Springer
14 years 1 months ago
Generation of Tree Decompositions by Iterated Local Search
Many instances of NP-hard problems can be solved efficiently if the treewidth of their corresponding graph is small. Finding the optimal tree decompositions is an NP-hard problem a...
Nysret Musliu