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» Inferring differentiation pathways from gene expression
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BMCBI
2007
97views more  BMCBI 2007»
13 years 9 months ago
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
Background: Microarray co-expression signatures are an important tool for studying gene function and relations between genes. In addition to genuine biological co-expression, corr...
Tineke Casneuf, Yves Van de Peer, Wolfgang Huber
BMCBI
2008
129views more  BMCBI 2008»
13 years 9 months ago
Gene set enrichment analysis for non-monotone association and multiple experimental categories
Background: Recently, microarray data analyses using functional pathway information, e.g., gene set enrichment analysis (GSEA) and significance analysis of function and expression...
Rongheng Lin, Shuangshuang Dai, Richard D. Irwin, ...
BMCBI
2011
13 years 3 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
VIS
2006
IEEE
128views Visualization» more  VIS 2006»
14 years 10 months ago
Hierarchy-based 3-D Visualization of Homologous Gene Expression across Different Organisms
With the explosive growth of proteomic and expression data of homologous genes, it becomes necessary to explore new methods to visualize and analyze related gene expression data t...
Li Jin, Karl V. Steiner, Carl J. Schmidt, Keith...
BMCBI
2006
123views more  BMCBI 2006»
13 years 8 months ago
How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different result
Background: Short oligonucleotide arrays for transcript profiling have been available for several years. Generally, raw data from these arrays are analysed with the aid of the Mic...
Frank F. Millenaar, John Okyere, Sean T. May, Mart...