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» Large Scale Simulation of Parallel Molecular Dynamics
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PDPTA
2000
13 years 10 months ago
Evaluation of Neural and Genetic Algorithms for Synthesizing Parallel Storage Schemes
Exploiting compile time knowledge to improve memory bandwidth can produce noticeable improvements at run-time [13, 1]. Allocating the data structure [13] to separate memories when...
Mayez A. Al-Mouhamed, Husam Abu-Haimed
ICPP
1995
IEEE
14 years 21 days ago
Progress: A Toolkit for Interactive Program Steering
Interactive program steering permits researchers to monitor and guide their applications during runtime. Interactive steering can help make end users more effective in addressing ...
Jeffrey S. Vetter, Karsten Schwan
SCFBM
2008
92views more  SCFBM 2008»
13 years 8 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
IPPS
2010
IEEE
13 years 7 months ago
Enhancing adaptive middleware for quantum chemistry applications with a database framework
Quantum chemistry applications such as the General Atomic and Molecular Electronic Structure System (GAMESS) that can execute on a complex peta-scale parallel computing environment...
Lakshminarasimhan Seshagiri, Meng-Shiou Wu, Masha ...
GECCO
2004
Springer
183views Optimization» more  GECCO 2004»
14 years 2 months ago
A Novel Immune Feedback Control Algorithm and Its Applications
This paper first analyzes the feedback principle of nature immune system and then the immune process is imitated by virtue of nonlinear molecular dynamics. Then the mathematic mode...
Zhen-qiang Qi, Shen-min Song, Zhao-hua Yang, Guang...