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CICLING
2009
Springer
14 years 9 months ago
Improved Unsupervised Name Discrimination with Very Wide Bigrams and Automatic Cluster Stopping
We cast name discrimination as a problem in clustering short contexts. Each occurrence of an ambiguous name is treated independently, and represented using second?order context vec...
Ted Pedersen
RECOMB
2006
Springer
14 years 9 months ago
Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction
We present a model for predicting HLA class I restricted CTL epitopes. In contrast to almost all other work in this area, we train a single model on epitopes from all HLA alleles a...
David Heckerman, Carl Myers Kadie, Jennifer Listga...
RECOMB
2004
Springer
14 years 9 months ago
Probabilistic discovery of overlapping cellular processes and their regulation
In this paper, we explore modeling overlapping biological processes. We discuss a probabilistic model of overlapping biological processes, gene membership in those processes, and ...
Alexis Battle, Eran Segal, Daphne Koller
RECOMB
2003
Springer
14 years 9 months ago
Modeling dependencies in protein-DNA binding sites
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...
SIGMOD
2009
ACM
189views Database» more  SIGMOD 2009»
14 years 9 months ago
Query segmentation using conditional random fields
A growing mount of available text data are being stored in relational databases, giving rise to an increasing need for the RDBMSs to support effective text retrieval. In this pape...
Xiaohui Yu, Huxia Shi