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EUROSYS
2010
ACM
14 years 3 months ago
PUSH: A Dataflow Shell
The deluge of huge data sets such as those provided by sensor networks, online transactions, and the web provide exciting opportunities for data analysis. The scale of the data ...
Noah Evans, Eric Van Hensbergen
CASES
2003
ACM
14 years 2 months ago
Encryption overhead in embedded systems and sensor network nodes: modeling and analysis
Recent research in sensor networks has raised issues of security for small embedded devices. Security concerns are motivated by the deployment of a large number of sensory devices...
Ramnath Venugopalan, Prasanth Ganesan, Pushkin Ped...
BMCBI
2007
233views more  BMCBI 2007»
13 years 9 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2011
13 years 20 days ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
RECOMB
2006
Springer
14 years 9 months ago
RNA Secondary Structure Prediction Via Energy Density Minimization
Abstract. There is a resurgence of interest in RNA secondary structure prediction problem (a.k.a. the RNA folding problem) due to the discovery of many new families of non-coding R...
Can Alkan, Emre Karakoç, Süleyman Cenk...