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BMCBI
2007
152views more  BMCBI 2007»
13 years 10 months ago
PASSIM - an open source software system for managing information in biomedical studies
Background: One of the crucial aspects of day-to-day laboratory information management is collection, storage and retrieval of information about research subjects and biomedical s...
Juris Viksna, Edgars Celms, Martins Opmanis, Karli...
BMCBI
2010
149views more  BMCBI 2010»
13 years 10 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
BMCBI
2004
200views more  BMCBI 2004»
13 years 10 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
HPCA
2006
IEEE
14 years 10 months ago
Retention-aware placement in DRAM (RAPID): software methods for quasi-non-volatile DRAM
Measurements of an off-the-shelf DRAM chip confirm that different cells retain information for different amounts of time. This result extends to DRAM rows, or pages (retention tim...
Ravi K. Venkatesan, Stephen Herr, Eric Rotenberg
ICS
2007
Tsinghua U.
14 years 4 months ago
Performance driven data cache prefetching in a dynamic software optimization system
Software or hardware data cache prefetching is an efficient way to hide cache miss latency. However effectiveness of the issued prefetches have to be monitored in order to maximi...
Jean Christophe Beyler, Philippe Clauss