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» Locality Optimization for Program Instances
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133
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BMCBI
2004
150views more  BMCBI 2004»
15 years 2 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
DAC
2002
ACM
16 years 3 months ago
ILP-based engineering change
We have developed a generic integer linear programming(ILP)based engineering change(EC) methodology. The EC methodology has three components: enabling, fast, and preserving. Enabl...
Farinaz Koushanfar, Jennifer L. Wong, Jessica Feng...
AOSD
2008
ACM
15 years 4 months ago
Edicts: implementing features with flexible binding times
In a software product line, the binding time of a feature is the time at which one decides to include or exclude a feature from a product. Typical binding site implementations are...
Venkat Chakravarthy, John Regehr, Eric Eide
ASPLOS
2010
ACM
15 years 1 months ago
Best-effort semantic document search on GPUs
Semantic indexing is a popular technique used to access and organize large amounts of unstructured text data. We describe an optimized implementation of semantic indexing and docu...
Surendra Byna, Jiayuan Meng, Anand Raghunathan, Sr...
98
Voted
BMCBI
2007
147views more  BMCBI 2007»
15 years 2 months ago
MaxAlign: maximizing usable data in an alignment
Background: The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for ...
Rodrigo Gouveia-Oliveira, Peter Wad Sackett, Ander...