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» Logic-Based Modeling in Systems Biology
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NAR
2007
150views more  NAR 2007»
15 years 3 months ago
CellCircuits: a database of protein network models
CellCircuits (http://www.cellcircuits.org) is an openaccess database of molecular network models, designed to bridge the gap between databases of individual pairwise molecular int...
H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Idek...
RAS
2000
116views more  RAS 2000»
15 years 4 months ago
Collision avoidance using a model of the locust LGMD neuron
The lobula giant movement detector (LGMD) system in the locust responds selectively to objects approaching the animal on a collision course. In earlier work we have presented a ne...
Mark Blanchard, F. Claire Rind, Paul F. M. J. Vers...
BMCBI
2007
158views more  BMCBI 2007»
15 years 4 months ago
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Background: The joint analysis of several categorical variables is a common task in many areas of biology, and is becoming central to systems biology investigations whose goal is ...
Corinne Dahinden, Giovanni Parmigiani, Mark C. Eme...
TCBB
2010
80views more  TCBB 2010»
15 years 2 months ago
On the Importance of Comprehensible Classification Models for Protein Function Prediction
—The literature on protein function prediction is currently dominated by works aimed at maximizing predictive accuracy, ignoring the important issues of validation and interpreta...
Alex Alves Freitas, Daniela Wieser, Rolf Apweiler
TOG
2012
222views Communications» more  TOG 2012»
13 years 6 months ago
Plastic trees: interactive self-adapting botanical tree models
We present a dynamic tree modeling and representation technique that allows complex tree models to interact with their environment. Our method uses changes in the light distributi...
Sören Pirk, Ondrej Stava, Julian Kratt, Miche...