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ECCB
2008
IEEE
14 years 5 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 5 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
ECMDAFA
2005
Springer
130views Hardware» more  ECMDAFA 2005»
14 years 4 months ago
Control Flow Analysis of UML 2.0 Sequence Diagrams
This article presents a control flow analysis methodology based on UML 2.0 sequence diagrams (SD). In contrast to the conventional code-based control flow analysis techniques, thi...
Vahid Garousi, Lionel C. Briand, Yvan Labiche
RECOMB
2006
Springer
14 years 11 months ago
Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in
Meiotic recombination is a fundamental biological event and one of the principal evolutionary forces responsible for shaping genetic variation within species. In addition to its fu...
Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H...
ECMDAFA
2010
Springer
228views Hardware» more  ECMDAFA 2010»
14 years 2 months ago
Example-Based Sequence Diagrams to Colored Petri Nets Transformation Using Heuristic Search
Dynamic UML models like sequence diagrams (SD) lack sufficient formal semantics, making it difficult to build automated tools for their analysis, simulation and validation. A commo...
Marouane Kessentini, Arbi Bouchoucha, Houari A. Sa...