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BMCBI
2008
153views more  BMCBI 2008»
13 years 8 months ago
Estimating the size of the solution space of metabolic networks
Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
Alfredo Braunstein, Roberto Mulet, Andrea Pagnani
BMCBI
2007
129views more  BMCBI 2007»
13 years 8 months ago
A novel approach to sequence validating protein expression clones with automated decision making
Background: Whereas the molecular assembly of protein expression clones is readily automated and routinely accomplished in high throughput, sequence verification of these clones i...
Elena Taycher, Andreas Rolfs, Yanhui Hu, Dongmei Z...
CORR
2008
Springer
141views Education» more  CORR 2008»
13 years 8 months ago
Truthful Unsplittable Flow for Large Capacity Networks
The unsplittable flow problem is one of the most extensively studied optimization problems in the field of networking. An instance of it consists of an edge capacitated graph and ...
Yossi Azar, Iftah Gamzu, Shai Gutner
BMCBI
2006
120views more  BMCBI 2006»
13 years 8 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
IM
2008
13 years 8 months ago
Directed Random Dot Product Graphs
In this paper we consider three models for random graphs that utilize the inner product as their fundamental object. We analyze the behavior of these models with respect to cluster...
Stephen J. Young, Edward R. Scheinerman