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IPPS
2010
IEEE
13 years 5 months ago
Enhancing adaptive middleware for quantum chemistry applications with a database framework
Quantum chemistry applications such as the General Atomic and Molecular Electronic Structure System (GAMESS) that can execute on a complex peta-scale parallel computing environment...
Lakshminarasimhan Seshagiri, Meng-Shiou Wu, Masha ...
CF
2006
ACM
13 years 11 months ago
Performance characteristics of an adaptive mesh refinement calculation on scalar and vector platforms
Adaptive mesh refinement (AMR) is a powerful technique that reduces the resources necessary to solve otherwise intractable problems in computational science. The AMR strategy solv...
Michael L. Welcome, Charles A. Rendleman, Leonid O...
BMCBI
2007
143views more  BMCBI 2007»
13 years 7 months ago
An adaptive bin framework search method for a beta-sheet protein homopolymer model
Background: The problem of protein structure prediction consists of predicting the functional or native structure of a protein given its linear sequence of amino acids. This probl...
Alena Shmygelska, Holger H. Hoos
EUROPAR
2007
Springer
14 years 1 months ago
Esodyp+: Prefetching in the Jackal Software DSM
Abstract. Prefetching transfers a data item in advance from its storage location to its usage location so that communication is hidden and does not delay computation. We present a ...
Michael Klemm, Jean Christophe Beyler, Ronny T. La...
IEEEPACT
2009
IEEE
14 years 2 months ago
Automatic Tuning of Discrete Fourier Transforms Driven by Analytical Modeling
—Analytical models have been used to estimate optimal values for parameters such as tile sizes in the context of loop nests. However, important algorithms such as fast Fourier tr...
Basilio B. Fraguela, Yevgen Voronenko, Markus P&uu...