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» Metabolic networks analysis using convex optimization
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HYBRID
2004
Springer
14 years 1 months ago
Understanding the Bacterial Stringent Response Using Reachability Analysis of Hybrid Systems
Abstract. In this paper we model coupled genetic and metabolic networks as hybrid systems. The vector fields are multi - affine, i.e., have only product - type nonlinearities to a...
Calin Belta, Peter Finin, Luc C. G. J. M. Habets, ...
IV
2009
IEEE
132views Visualization» more  IV 2009»
14 years 2 months ago
Visual Analysis of Overlapping Biological Networks
This investigates a new problem of visualizing a set of overlapping networks. We present two methods for constructing visualization of two and three overlapping networks in three ...
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschü...
BMCBI
2008
188views more  BMCBI 2008»
13 years 7 months ago
anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data
Background: Compared to other omics techniques, quantitative metabolomics is still at its infancy. Complex sample preparation and analytical procedures render exact quantification...
Nicola Zamboni, Anne Kümmel, Matthias Heinema...
CISS
2008
IEEE
14 years 2 months ago
Game theory for heterogeneous flow control
—A general framework is developed for networks with flows that use all available congestion signals to regulate their rates. It is conceptually a generalization of the existing ...
Ao Tang, Lachlan L. H. Andrew
BIOINFORMATICS
2011
13 years 2 months ago
Inverse perturbation for optimal intervention in gene regulatory networks
Motivation: Analysis and intervention in the dynamics of gene regulatory networks is at the heart of emerging efforts in the development of modern treatment of numerous ailments i...
Nidhal Bouaynaya, Roman Shterenberg, Dan Schonfeld