76 search results - page 6 / 16 » Pattern Matching in Degenerate DNA RNA Sequences |
ISMB
2000
13 years 10 months ago
2000
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
BMCBI
2007
13 years 8 months ago
2007
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
CSB
2005
IEEE
13 years 10 months ago
2005
IEEE
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
BMCBI
2002
13 years 8 months ago
2002
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
APBC
2004
13 years 10 months ago
2004
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...