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    » Pattern Recognition Using Functions of Multiple Instances
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    BMCBI
    2007
    126views more  BMCBI 2007»
    Including probe-level uncertainty in model-based gene expression clustering
    13 years 6 months ago
    Including probe-level uncertainty in model-based gene expression clustering
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    Background: Clustering is an important analysis performed on microarray gene expression data since it groups genes which have similar expression patterns and enables the explorati...
    Xuejun Liu, Kevin K. Lin, Bogi Andersen, Magnus Ra...
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    BIBE
    2007
    IEEE
    195views Bioinformatics» more  BIBE 2007»
    Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
    14 years 1 months ago
    Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
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    — In this paper, we propose a system for finding partial positive and negative coregulated gene clusters in microarray data. Genes are clustered together if they show the same p...
    Kerstin Koch, Stefan Schönauer, Ivy Jansen, J...
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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 6 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
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    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    BMCBI
    2008
    144views more  BMCBI 2008»
    Local conservation scores without a priori assumptions on neutral substitution rates
    13 years 6 months ago
    Local conservation scores without a priori assumptions on neutral substitution rates
    Download  www.biomedcentral.com
    Background: Comparative genomics aims to detect signals of evolutionary conservation as an indicator of functional constraint. Surprisingly, results of the ENCODE project revealed...
    Janis Dingel, Pavol Hanus, Niccolò Leonardi...
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    NAR
    2010
    123views more  NAR 2010»
    Xenbase: gene expression and improved integration
    13 years 1 months ago
    Xenbase: gene expression and improved integration
    Download  dspace.ucalgary.ca
    Xenbase (www.xenbase.org), the model organism database for Xenopus laevis and X. (Silurana) tropicalis, is the principal centralized resource of genomic, development data and comm...
    Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ch...
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