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» Predicting Peroxisomal Proteins
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BCB
2010
140views Bioinformatics» more  BCB 2010»
13 years 3 months ago
Guiding belief propagation using domain knowledge for protein-structure determination
A major bottleneck in high-throughput protein crystallography is producing protein-structure models from an electrondensity map. In previous work, we developed Acmi, a probabilist...
Ameet Soni, Craig A. Bingman, Jude W. Shavlik
ICRA
2006
IEEE
99views Robotics» more  ICRA 2006»
14 years 2 months ago
Characterization of Protein based Spring-like Elastic Joints for Biorobotic Applications
—This paper presents a molecular mechanics study using a molecular dynamics software (NAMD) for characterization of molecular elastic joints for bio nanorobotic prototyping. Simp...
Mustapha Hamdi, Gaurav Sharma, Antoine Ferreira, C...
GECCO
2004
Springer
14 years 1 months ago
GA-Facilitated Knowledge Discovery and Pattern Recognition Optimization Applied to the Biochemistry of Protein Solvation
Abstract. The authors present a GA optimization technique for cosinebased k-nearest neighbors classification that improves predictive accuracy in a class-balanced manner while sim...
Michael R. Peterson, Travis E. Doom, Michael L. Ra...
ICMLA
2008
13 years 9 months ago
Inferring Sparse Kernel Combinations and Relevance Vectors: An Application to Subcellular Localization of Proteins
In this paper, we introduce two new formulations for multi-class multi-kernel relevance vector machines (mRVMs) that explicitly lead to sparse solutions, both in samples and in nu...
Theodoros Damoulas, Yiming Ying, Mark A. Girolami,...
BMCBI
2010
142views more  BMCBI 2010»
13 years 8 months ago
Classification of protein sequences by means of irredundant patterns
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
Matteo Comin, Davide Verzotto