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    » Prediction of indirect interactions in proteins
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    RECOMB
    2007
    Springer
    160views Computational Biology» more  RECOMB 2007»
    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    14 years 11 months ago
    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    Download  web.mit.edu
    We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
    Rohit Singh, Jinbo Xu, Bonnie Berger
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    BMCBI
    2010
    174views more  BMCBI 2010»
    The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based h
    13 years 11 months ago
    The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based h
    Download  www.biomedcentral.com
    Background: To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight...
    Junbai Wang
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    BMCBI
    2010
    179views more  BMCBI 2010»
    A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties
    13 years 11 months ago
    A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties
    Download  www.biomedcentral.com
    Background: Genetic interaction profiles are highly informative and helpful for understanding the functional linkages between genes, and therefore have been extensively exploited ...
    Zhuhong You, Zheng Yin, Kyungsook Han, De-Shuang H...
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    RECOMB
    2006
    Springer
    151views Computational Biology» more  RECOMB 2006»
    Integrated Protein Interaction Networks for 11 Microbes
    14 years 11 months ago
    Integrated Protein Interaction Networks for 11 Microbes
    Download  ai.stanford.edu
    We have combined four different types of functional genomic data to create high coverage protein interaction networks for 11 microbes. Our integration algorithm naturally handles s...
    Balaji S. Srinivasan, Antal F. Novak, Jason Flanni...
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    NAR
    2011
    211views Computer Vision» more  NAR 2011»
    DIMA 3.0: Domain Interaction Map
    13 years 1 months ago
    DIMA 3.0: Domain Interaction Map
    Download  nar.oxfordjournals.org
    Domain Interaction MAp (DIMA, available at http:// webclu.bio.wzw.tum.de/dima) is a database of predicted and known interactions between protein domains. It integrates 5807 struct...
    Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Fri...
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