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» Prediction of indirect interactions in proteins
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CODES
2006
IEEE
14 years 1 months ago
Integrated analysis of communicating tasks in MPSoCs
Predicting timing behavior is key to efficient embedded real-time system design and verification. Especially memory accesses and co-processor calls over shared communication net...
Simon Schliecker, Matthias Ivers, Rolf Ernst
BIB
2010
129views more  BIB 2010»
13 years 7 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
Metamotifs - a generative model for building families of nucleotide position weight matrices
Background: Development of high-throughput methods for measuring DNA interactions of transcription factors together with computational advances in short motif inference algorithms...
Matias Piipari, Thomas A. Down, Tim J. P. Hubbard
BMCBI
2007
127views more  BMCBI 2007»
13 years 7 months ago
CORRIE: enzyme sequence annotation with confidence estimates
Using a previously developed automated method for enzyme annotation, we report the reannotation of the ENZYME database and the analysis of local error rates per class. In control ...
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks,...
ISPA
2007
Springer
14 years 1 months ago
Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview
Grid and distributed public computing schemes has become an essential tool for many scientific fields including bioinformatics, computational biology and systems biology. The adopt...
Azhar Ali Shah, Daniel Barthel, Natalio Krasnogor