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IV
2006
IEEE
125views Visualization» more  IV 2006»
14 years 1 months ago
Visualization of Lattice-Based Protein Folding Simulations
Analysis of the spacial structure of proteins including folding processes is a challenge for modern bioinformatics. Due to limited experimental access to folding processes, comput...
Sebastian Potzsch, Gerik Scheuermann, Peter F. Sta...
RECOMB
2006
Springer
14 years 8 months ago
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
Abstract. This paper presents a new method for studying protein folding kinetics. It uses the recently introduced Stochastic Roadmap Simulation (SRS) method to estimate the transit...
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L...
ARC
2007
Springer
140views Hardware» more  ARC 2007»
13 years 12 months ago
Reconfigurable Computing for Accelerating Protein Folding Simulations
Abstract. This paper presents a methodology for the design of a reconfigurable computing system applied to a complex problem in molecular Biology: the protein folding problem. An e...
Nilton B. Armstrong, Heitor S. Lopes, Carlos R. Er...
IJBRA
2007
84views more  IJBRA 2007»
13 years 7 months ago
Is the protein folding an aim-oriented process? Human haemoglobin as example
: The model for protein folding (in silico) simulation is presented. Three steps have been implemented: • early stage folding based on the backbone conformation • hydrophobic c...
Michal Brylinski, Leszek Konieczny, Irena Roterman
BICOB
2010
Springer
14 years 19 days ago
Folding-aware and Structure-conscious 3D Substructures in Folding Data: Identification and Applications
Molecular dynamics simulations have been employed by biologists to study the protein folding problem. Such simulations have resulted in a large number of protein folding trajector...
Hui Yang, Saurabh Gupte, Runtang Wang, Rahul Parte