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» Requirements of Phylogenetic Databases
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BMCBI
2007
166views more  BMCBI 2007»
15 years 4 months ago
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Background: In proteomic analysis, MS/MS spectra acquired by mass spectrometer are assigned to peptides by database searching algorithms such as SEQUEST. The assignations of pepti...
Xinning Jiang, Xiaogang Jiang, Guanghui Han, Mingl...
BMCBI
2006
182views more  BMCBI 2006»
15 years 4 months ago
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila
Background: Biological processes are mediated by networks of interacting genes and proteins. Efforts to map and understand these networks are resulting in the proliferation of int...
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jod...
CACM
1998
110views more  CACM 1998»
15 years 4 months ago
Viewing WISs as Database Applications
abstraction for modeling these problems is to view the Web as a collection of (usually small and heterogeneous) databases, and to view programs that extract and process Web data au...
Gustavo O. Arocena, Alberto O. Mendelzon
VLDB
2004
ACM
161views Database» more  VLDB 2004»
16 years 4 months ago
Supporting top-k join queries in relational databases
Ranking queries produce results that are ordered on some computed score. Typically, these queries involve joins, where users are usually interested only in the top-k join results....
Ihab F. Ilyas, Walid G. Aref, Ahmed K. Elmagarmid
DATE
2009
IEEE
159views Hardware» more  DATE 2009»
15 years 11 months ago
Design and implementation of a database filter for BLAST acceleration
— BLAST is a very popular Computational Biology algorithm. Since it is computationally expensive it is a natural target for acceleration research, and many reconfigurable archite...
Panagiotis Afratis, Constantinos Galanakis, Euripi...