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» Searching Without a Heuristic: Efficient Use of Abstraction
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ECOOP
2004
Springer
14 years 1 months ago
Finding and Removing Performance Bottlenecks in Large Systems
Abstract. Software systems obey the 80/20 rule: aggressively optimizing a vital few execution paths yields large speedups. However, finding the vital few paths can be difficult, e...
Glenn Ammons, Jong-Deok Choi, Manish Gupta, Nikhil...
BMCBI
2007
162views more  BMCBI 2007»
13 years 8 months ago
Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis
Background: Genome-wide identification of specific oligonucleotides (oligos) is a computationallyintensive task and is a requirement for designing microarray probes, primers, and ...
Chun-Chi Liu, Chin-Chung Lin, Ker-Chau Li, Wen-Shy...
BMCBI
2007
149views more  BMCBI 2007»
13 years 8 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
INEX
2004
Springer
14 years 1 months ago
Hybrid XML Retrieval Revisited
Abstract. The widespread adoption of XML necessitates structureaware systems that can effectively retrieve information from XML document collections. This paper reports on the par...
Jovan Pehcevski, James A. Thom, Seyed M. M. Tahagh...
RECOMB
2004
Springer
14 years 8 months ago
Aligning alignments exactly
d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...
John D. Kececioglu, Dean Starrett