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IPPS
2006
IEEE
14 years 1 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...
IPPS
2006
IEEE
14 years 1 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
ICCAD
2010
IEEE
109views Hardware» more  ICCAD 2010»
13 years 5 months ago
Misleading energy and performance claims in sub/near threshold digital systems
Abstract-- Many of us in the field of ultra-low-Vdd processors experience difficulty in assessing the sub/near threshold circuit techniques proposed by earlier papers. This paper i...
Yu Pu, Xin Zhang, Jim Huang, Atsushi Muramatsu, Ma...
HPCA
2005
IEEE
14 years 8 months ago
Performance, Energy, and Thermal Considerations for SMT and CMP Architectures
Simultaneous multithreading (SMT) and chip multiprocessing (CMP) both allow a chip to achieve greater throughput, but their relative energy-efficiency and thermal properties are s...
Yingmin Li, David Brooks, Zhigang Hu, Kevin Skadro...
IPPS
2005
IEEE
14 years 1 months ago
Reducing Power with Performance Constraints for Parallel Sparse Applications
Sparse and irregular computations constitute a large fraction of applications in the data-intensive scientific domain. While every effort is made to balance the computational wor...
Guangyu Chen, Konrad Malkowski, Mahmut T. Kandemir...