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» TRANSFAC: an integrated system for gene expression regulatio...
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CSB
2003
IEEE
111views Bioinformatics» more  CSB 2003»
14 years 4 months ago
A Contradiction-Based Framework for Testing Gene Regulation Hypotheses
We have developed a mathematical framework for representing and testing hypotheses about gene, protein, and signaling molecule interactions. It takes a hierarchical, contradiction...
Steve Racunas, Nigam Shah, Nina V. Fedoroff
NAR
2011
357views Computer Vision» more  NAR 2011»
13 years 5 months ago
miRGator v2.0 : an integrated system for functional investigation of microRNAs
miRGator is an integrated database of microRNA (miRNA)-associated gene expression, target prediction, disease association and genomic annotation, which aims to facilitate function...
Sooyoung Cho, Yukyung Jun, Sanghyun Lee, Hyung-Seo...
EDBT
2002
ACM
130views Database» more  EDBT 2002»
14 years 11 months ago
Gene Expression Data Management: A Case Study
One of the major challenges facing scientists dealing with gene expression data is how to integrate, explore and analyze vast quantities of related data, often residing in multiple...
Victor M. Markowitz, I-Min A. Chen, Anthony Kosky
BMCBI
2010
96views more  BMCBI 2010»
13 years 11 months ago
QTLminer: identifying genes regulating quantitative traits
Background: Quantitative trait locus (QTL) mapping identifies genomic regions that likely contain genes regulating a quantitative trait. However, QTL regions may encompass tens to...
Rudi Alberts, Klaus Schughart
BIBE
2003
IEEE
121views Bioinformatics» more  BIBE 2003»
14 years 4 months ago
Time Series Analysis of Gene Expression and Location Data
We develop a method for integrating time series expression profiles and factor-gene binding data to quantify dynamic aspects of gene regulation. We estimate latencies for transcr...
Chen-Hsiang Yeang, Tommi Jaakkola