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DM
2008
100views more  DM 2008»
13 years 10 months ago
Staircase tilings and k-Catalan structures
Many interesting combinatorial objects are enumerated by the k-Catalan numbers, one possible generalization of the Catalan numbers. We will present a new combinatorial object that...
Silvia Heubach, Nelson Y. Li, Toufik Mansour
BMCBI
2006
135views more  BMCBI 2006»
13 years 10 months ago
TF Target Mapper: A BLAST search tool for the identification of Transcription Factor target genes
Background: In the current era of high throughput genomics a major challenge is the genome-wide identification of target genes for specific transcription factors. Chromatin immuno...
Sebastiaan Horsman, Michael J. Moorhouse, Victor C...
BMCBI
2006
161views more  BMCBI 2006»
13 years 10 months ago
Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome
Background: Automatic annotation of sequenced eukaryotic genomes integrates a combination of methodologies such as ab-initio methods and alignment of homologous genes and/or prote...
Alan Christoffels, Richard Bartfai, Hamsa Srinivas...
BMCBI
2006
84views more  BMCBI 2006»
13 years 10 months ago
Inferring topology from clustering coefficients in protein-protein interaction networks
Background: Although protein-protein interaction networks determined with high-throughput methods are incomplete, they are commonly used to infer the topology of the complete inte...
Caroline C. Friedel, Ralf Zimmer
BMCBI
2006
179views more  BMCBI 2006»
13 years 10 months ago
Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
Background: In this study, we present a robust and reliable computational method for tag-togene assignment in serial analysis of gene expression (SAGE). The method relies on curre...
Rodrigo Malig, Cristian Varela, Eduardo Agosin, Fr...
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