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NAR
2011
193views Computer Vision» more  NAR 2011»
13 years 19 days ago
AREsite: a database for the comprehensive investigation of AU-rich elements
AREsite is an online resource for the detailed investigation of AU-rich elements (ARE) in vertebrate mRNA 30 -untranslated regions (UTRs). AREs are one of the most prominent cis-a...
Andreas R. Gruber, Jörg Fallmann, Franz Krato...
NAR
1998
104views more  NAR 1998»
13 years 9 months ago
Database on the structure of large ribosomal subunit RNA
Our database on large ribosomal subunit RNA contained 334 sequences in July, 1995. All sequences in the database are aligned, taking into account secondary structure. The aligned ...
Peter De Rijk, An Caers, Yves Van de Peer, Rupert ...
BMCBI
2007
87views more  BMCBI 2007»
13 years 9 months ago
A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
Background: Mitochondrial tRNAs have been the subject of study for structural biologists interested in their secondary structure characteristics, evolutionary biologists have rese...
Konstantin Yu Popadin, Leila A. Mamirova, Fyodor A...
BMCBI
2007
143views more  BMCBI 2007»
13 years 10 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
BMCBI
2005
162views more  BMCBI 2005»
13 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes