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» Tools for Simulating and Analyzing RNA Folding Kinetics
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RECOMB
2007
Springer
14 years 11 months ago
Tools for Simulating and Analyzing RNA Folding Kinetics
Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M...
RECOMB
2004
Springer
14 years 11 months ago
Using motion planning to study RNA folding kinetics
We propose a novel, motion planning based approach to approximately map the energy landscape of an RNA molecule. Our method is based on the successful probabilistic roadmap motion...
Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, ...
RECOMB
2006
Springer
14 years 11 months ago
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
Abstract. This paper presents a new method for studying protein folding kinetics. It uses the recently introduced Stochastic Roadmap Simulation (SRS) method to estimate the transit...
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L...
BMCBI
2008
130views more  BMCBI 2008»
13 years 11 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
COMPLIFE
2005
Springer
14 years 4 months ago
Robust Perron Cluster Analysis for Various Applications in Computational Life Science
In the present paper we explain the basic ideas of Robust Perron Cluster Analysis (PCCA+) and exemplify the different application areas of this new and powerful method. Recently, ...
Marcus Weber, Susanna Kube