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BMCBI
2007
164views more  BMCBI 2007»
13 years 8 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
BMCBI
2007
111views more  BMCBI 2007»
13 years 8 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
BMCBI
2007
203views more  BMCBI 2007»
13 years 8 months ago
A Grid-based solution for management and analysis of microarrays in distributed experiments
Several systems have been presented in the last years in order to manage the complexity of large microarray experiments. Although good results have been achieved, most systems ten...
Ivan Porro, Livia Torterolo, Luca Corradi, Marco F...
IJHPCA
2008
131views more  IJHPCA 2008»
13 years 8 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
CORR
2007
Springer
126views Education» more  CORR 2007»
13 years 8 months ago
Linear Tabling Strategies and Optimizations
Recently there has been a growing interest of research in tabling in the logic programming community because of its usefulness in a variety of application domains including progra...
Neng-Fa Zhou, Taisuke Sato, Yi-Dong Shen
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