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NAR
2011
257views Computer Vision» more  NAR 2011»
12 years 11 months ago
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
An essential prerequisite for any systems-level understanding of cellular functions is to correctly uncover and annotate all functional interactions among proteins in the cell. To...
Damian Szklarczyk, Andrea Franceschini, Michael Ku...
NAR
2011
305views Computer Vision» more  NAR 2011»
12 years 11 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
PLDI
2011
ACM
12 years 11 months ago
Automatic compilation of MATLAB programs for synergistic execution on heterogeneous processors
MATLAB is an array language, initially popular for rapid prototyping, but is now being increasingly used to develop production code for numerical and scientific applications. Typ...
Ashwin Prasad, Jayvant Anantpur, R. Govindarajan
PROCEDIA
2011
12 years 11 months ago
GPU-accelerated Chemical Similarity Assessment for Large Scale Databases
The assessment of chemical similarity between molecules is a basic operation in chemoinformatics, a computational area concerning with the manipulation of chemical structural info...
Marco Maggioni, Marco D. Santambrogio, Jie Liang
SIGMETRICS
2011
ACM
182views Hardware» more  SIGMETRICS 2011»
12 years 11 months ago
Fine-grained latency and loss measurements in the presence of reordering
Modern trading and cluster applications require microsecond latencies and almost no losses in data centers. This paper introduces an algorithm called FineComb that can estimate ...
Myungjin Lee, Sharon Goldberg, Ramana Rao Kompella...
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