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BMCBI
2002
137views more  BMCBI 2002»
13 years 7 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
ACMSE
2004
ACM
14 years 28 days ago
E-R modeler: a database modeling toolkit for Eclipse
Eclipse is a Java integrated development environment (IDE) and tool integration platform that offers numerous extension points for customization through a plug-in architecture. Th...
Song Zhou, Chuanxi Xu, Hui Wu, Jing Zhang, Yuehua ...
VLDB
2005
ACM
162views Database» more  VLDB 2005»
14 years 29 days ago
FiST: Scalable XML Document Filtering by Sequencing Twig Patterns
In recent years, publish-subscribe (pub-sub) systems based on XML document filtering have received much attention. In a typical pubsub system, subscribed users specify their inte...
Joonho Kwon, Praveen Rao, Bongki Moon, Sukho Lee
ICDE
2009
IEEE
173views Database» more  ICDE 2009»
13 years 5 months ago
Efficient Mining of Closed Repetitive Gapped Subsequences from a Sequence Database
There is a huge wealth of sequence data available, for example, customer purchase histories, program execution traces, DNA, and protein sequences. Analyzing this wealth of data to ...
Bolin Ding, David Lo, Jiawei Han, Siau-Cheng Khoo
KDD
2007
ACM
231views Data Mining» more  KDD 2007»
14 years 8 months ago
Xproj: a framework for projected structural clustering of xml documents
XML has become a popular method of data representation both on the web and in databases in recent years. One of the reasons for the popularity of XML has been its ability to encod...
Charu C. Aggarwal, Na Ta, Jianyong Wang, Jianhua F...