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ISMB
1997
13 years 8 months ago
Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage
Protein chimerism is a phenomenon involving the combination of multiple ancestral sequences into a single, multi-domain protein through evolution. We propose a novel method for de...
Lawrence Hunter, Barry Zeeberg
ISMB
1997
13 years 8 months ago
Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations
We present a new method for determining the consensus sequence in DNA fragment assemblies. The new method, Trace-Evidence, directly incorporates aligned ABI trace information into...
Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Sha...
ISMB
1997
13 years 8 months ago
Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors
This workdemonstrates newtechniques developed for the prediction of protein folding class in the context of the most comprehensiveStructural Classification of Proteins (SCOP). The...
Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim
ISMB
1997
13 years 8 months ago
RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation
Biological macromoleculesrepresent a valuable source of informationfor the identification and phylogenetic classification of microorganisms.Oneof the mostcommonlyused macromolecul...
Henning Hermjakob, Robert Giegerich, Walter Arnold
ISMB
1997
13 years 8 months ago
Enumerating and Ranking Discrete Motifs
Discrete motifsthat discriminate functionalclasses of proteins are useful for classifying newsequences, capturingstructural constraints, andidentifyingprotein subclasses.Despiteth...
Craig G. Nevill-Manning, Komal S. Sethi, Thomas D....